Dataset with annotation of CG identifiers

Description

See the vignette End-to-end analysis of cell-based screens: from raw intensity readings to the annotated hit list, Section Using biomaRt to annotate the target genes online for details. The annotations were obtained on 21 September 2007.

Usage

data(bdgpbiomart)

Format

Dataframe with 21888 rows and 11 columns plate, well, controlStatus, HFAID, GeneID, chromosome_name, start_position, end_position, description, flybasename_gene, go, go_description.

Source

BioMart webinterface to Ensembl.

Examples

    data("bdgpbiomart")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(cellHTS2)
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cellHTS2/bdgpbiomart.Rd_%03d_medium.png", width=480, height=480)
> ### Name: bdgpbiomart
> ### Title: Dataset with annotation of CG identifiers
> ### Aliases: bdgpbiomart
> ### Keywords: datasets
> 
> ### ** Examples
> 
>     data("bdgpbiomart")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>