A sample S3 class cellHTS object - D. melanogaster genome-wide RNAi screen

Description

Archived S3 class cellHTS object corresponding to the first three 384-well plates of a genome-wide RNAi screen of cell viability in Drosophila Kc167 cells. This data set was assembled and stored using cellHTS package and is used to show how to convert an old S3 class cellHTS object to the new S4 data class associated with cellHTS2 package.

Usage

##cellHTS object, see examples for details

Format

S3 class cellHTS object as detailed in package cellHTS.

References

Boutros, M., Kiger, A.A., Armknecht,S., Kerr,K., Hild,M., Koch,B., Haas, S.A., Heidelberg Fly Array Consortium, Paro,R. and Perrimon, N. (2004) Genome-wide RNAi analysis of growth and viability in Drosophila cells, Science 303:832–5.

Examples

    data(oldKcViabSmall)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(cellHTS2)
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cellHTS2/data-oldKcViabSmall.Rd_%03d_medium.png", width=480, height=480)
> ### Name: oldKcViabSmall
> ### Title: A sample S3 class cellHTS object - D. melanogaster genome-wide
> ###   RNAi screen
> ### Aliases: oldKcViabSmall
> ### Keywords: datasets
> 
> ### ** Examples
> 
>     data(oldKcViabSmall)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>