Entrez identifiers for genes related with Prostate Cancer selected from two datasets analyzed by Welsh et al. (2001) and Singh et al. (2002) respectively.
The genes have been selected from freely available datasets in the internet using a standard workflow for selecting differentially expressed genes.
The dataset contains 4 character vectors, each corresponding to the entrez identifiers of the genes selected at a 5% and 1% significance level
from the Welsh and Singh dataset respectively.
welsh05EntrezIDs
List of genes selected from Welsh et al. study
at a 0.05 significance level.
welsh01EntrezIDs
List of genes selected from Welsh et al. study
at a 0.01 significance level.
singh05EntrezIDs
List of genes selected from Singh et al. study
at a 0.05 significance level.
singh01EntrezIDs
List of genes selected from Singh et al. study
at a 0.01 significance level.
Usage
data(prostateIds)
Format
Each dataset is a character vector with a different number of elements which (should) correspond to valid Entrez identifiers
Source
John B. Welsh, Lisa M. Sapinoso, Andrew I. Su, Suzanne G. Kern, Jessica
Wang-Rodriguez,
Christopher A. Moskaluk, Jr. Frierson, Henry F., and Garret
M. Hampton. Analysis of Gene
Expression Identifies Candidate Markers and Pharmacological Targets in
Prostate Cancer.
Cancer Res, 61(16):5974-5978, 2001.
Singh, Dinesh and Febbo, Phillip G and Ross, Kenneth and Jackson, Donald
G and Manola, Judith and Ladd, Christine and Tamayo, Pablo and Renshaw,
Andrew A and D'Amico, Anthony V and Richie, Jerome P and Lander, Eric S
and Loda, Massimo and Kantoff, Philip W and Golub, Todd R and Sellers,
William R.Gene expression correlates of clinical prostate cancer behavior.
Cancer Cell, 2002, Mar., 1(2) 203-209, 2002.
Examples
data(prostateIds)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(goProfiles)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: GO.db
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/goProfiles/prostateIds.Rd_%03d_medium.png", width=480, height=480)
> ### Name: prostateIds
> ### Title: Prostate cancer-related genes
> ### Aliases: prostateIds welsh01EntrezIDs welsh05EntrezIDs singh01EntrezIDs
> ### singh05EntrezIDs
> ### Keywords: datasets
>
> ### ** Examples
>
> data(prostateIds)
>
>
>
>
>
> dev.off()
null device
1
>