Androgen stimulation of prostate cancer Cell lines.

Description

This data set gives the RNA-seq data from an experiment measuring the effects of androgen stimulation on prostate cancer. Information is given about all (ENSEMBL) genes for which there was at least one mapping read in either the treated or untreated RNA-seq experiment. The edgeR package was used to determine which genes were differentially expressed. The details of the analysis can be found in the goseq vignette.

Usage

data(genes)

Format

A named vector of ENSEMBL genes, with 1 representing differential expression.

Source

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model, 2008, Li et. al.

References

Li, H., Lovci, M. T., Kwon, Y. S., Rosenfeld, M. G., Fu, X. D., Yeo, G. W. (2008) Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model Proceedings of the National Academy of Sciences of the United States of America Date: Dec 23 Vol: 105 Issue: 51 Pages: 20179-84

Examples

data(genes)
head(genes)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> library(goseq)
Loading required package: BiasedUrn
Loading required package: geneLenDataBase

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/goseq/genes.Rd_%03d_medium.png", width=480, height=480)
> ### Name: genes
> ### Title: Androgen stimulation of prostate cancer Cell lines.
> ### Aliases: genes
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(genes)
> head(genes)
ENSG00000230758 ENSG00000182463 ENSG00000124208 ENSG00000230753 ENSG00000224628 
              0               0               0               0               0 
ENSG00000125835 
              0 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>