R: internal data frame for NHGRI GWAS catalog
gwdf_2012_02_02 | R Documentation |
internal data frame for NHGRI GWAS catalog
Description
convenience container for imported table from NHGRI GWAS catalog
Usage
data("gwdf_2014_09_08")
Format
A data frame with 17832 observations on the following 34 variables.
- Date Added to Catalog
a character vector
PUBMEDID a numeric vector
- First Author
a character vector
Date a character vector
Journal a character vector
Link a character vector
Study a character vector
- Disease/Trait
a character vector
- Initial Sample Size
a character vector
- Replication Sample Size
a character vector
Region a character vector
Chr_id a character vector
Chr_pos a character vector
- Reported Gene(s)
a character vector
Mapped_gene a character vector
Upstream_gene_id a character vector
Downstream_gene_id a character vector
Snp_gene_ids a character vector
Upstream_gene_distance a character vector
Downstream_gene_distance a character vector
- Strongest SNP-Risk Allele
a character vector
SNPs a character vector
Merged a character vector
Snp_id_current a character vector
Context a character vector
Intergenic a character vector
- Risk Allele Frequency
a character vector
- p-Value
a character vector
Pvalue_mlog a character vector
- p-Value (text)
a character vector
- OR or beta
a character vector
- 95% CI (text)
a character vector
- Platform [SNPs passing QC]
a character vector
CNV a character vector
Note
In versions prior to 1.9.6,
The .onAttach function specifies which data frame is transformed
to GRanges. This is now managed manually.
Source
http://www.genome.gov/gwastudies
Examples
## Not run:
data(gwdf_2014_09_08)
# try gwascat:::gwdf2GRanges on this data.frame
## End(Not run)
Results
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