location information for 10000 SNPs probed on Affy GW 6.0

Description

location information for 10000 SNPs probed on Affy GW 6.0

Usage

data(locon6)

Format

A data frame with 10000 observations on the following 3 variables.

dbsnp_rs_id

a character vector

chrom

a character vector

physical_pos

a numeric vector

Details

extracted from pd.genomewidesnp.6 v 1.4.0; for demonstration purposes

Examples

data(locon6)
str(locon6) 

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(gwascat)
Loading required package: Homo.sapiens
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: OrganismDbi
Loading required package: GenomicFeatures
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GO.db

Loading required package: org.Hs.eg.db

Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
gwascat loaded.  Use data(ebicat38) for hg38 coordinates;
 data(ebicat37) for hg19 coordinates.
Warning message:
replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio' 
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/gwascat/locon6.Rd_%03d_medium.png", width=480, height=480)
> ### Name: locon6
> ### Title: location information for 10000 SNPs probed on Affy GW 6.0
> ### Aliases: locon6
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(locon6)
> str(locon6) 
'data.frame':	10000 obs. of  3 variables:
 $ dbsnp_rs_id : chr  "rs2887286" "rs1496555" "rs41477744" "rs3890745" ...
 $ chrom       : chr  "1" "1" "1" "1" ...
 $ physical_pos: int  1156131 2234251 2329564 2553624 2936870 2951834 3095126 3165267 3302871 3705226 ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>