Gene position data frame

Description

A data frame specifying the genomic locations of each gene/probe needs to be prepared with the following columns: gene name, chromosome number, start location (in base pairs) and the location (in base pairs).

Format

A data frame with 1000 observations with the following columns: gene name, chromosome number, start location (in base pairs) and the location (in base pairs).

Source

This example uses data generated by Williams and Lu, as available from the Gene Networkwebsite (genenetwork.com). This dataset comprises the profiles of mRNA abundance in whole eye tissue from n = 68 BXD RIS mice, as measured using Affymetrix M430 2.0 microarrays. To ease calculation and facilitate comparisons, we will use a set of G = 1000 probes

Examples

data(genepos)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(iBMQ)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/iBMQ/genepos.Rd_%03d_medium.png", width=480, height=480)
> ### Name: genepos
> ### Title: Gene position data frame
> ### Aliases: genepos
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(genepos)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>