A set of 290 SNPs from 60 F2 mice.

Description

A set of 290 single nucleotide polymorphic markers (SNPs) from 60 F2 mice.

Format

The format is: Formal class 'SnpSet' [package "Biobase"]

Source

This F2 cross data set containing genotypic and phenotypic information for 60 mice was obtained from the lab of Alan Attie at the University of Wisconsin-Madison. These data are also available at GEO (accession number GSE3330). Only the 5000 most variable expression traits out of 45,265 transcripts from the liver were used for the current example.

Examples

data(genotype.liver)

Results

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> library(iBMQ)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/iBMQ/genotype.liver.Rd_%03d_medium.png", width=480, height=480)
> ### Name: genotype.liver
> ### Title: A set of 290 SNPs from 60 F2 mice.
> ### Aliases: genotype.liver
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(genotype.liver)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>