A set of 1700 single nucleotide polymorphic markers (SNPs) from 68 BXD RIS mice.
Usage
data(snp)
Format
The format is:
Formal class 'SnpSet' [package "Biobase"]
Source
This example uses data generated by Williams and Lu, as available from the Gene Networkwebsite (genenetwork.com). This dataset comprises the profiles of mRNA abundance in wholeeye tissue from n = 68 BXD RIS mice, as measured using Affymetrix M430 2.0 microarrays . To ease calculation and facilitate comparisons, we will use a set of G = 1000 probes and
1700 single nucleotide polymorphic markers (SNPs).
Examples
data(snp)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(iBMQ)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/iBMQ/snp.Rd_%03d_medium.png", width=480, height=480)
> ### Name: snp
> ### Title: A set of 1700 SNP from 68 BXD RIS mice.
> ### Aliases: snp
> ### Keywords: datasets
>
> ### ** Examples
>
> data(snp)
>
>
>
>
>
> dev.off()
null device
1
>