Cytogenetic Banding information

Description

Cytogenetic banding information for Homo sapiens (Hs) ,Mus musculus (Mm) and Rattus norvegicus (Rn)

Usage

data(Hs.cytoband)

Format

Hs.cytoband is an environment containing 24 objects of class "cytoband" as defined by the idiogram package. Rn.cytoband and Mm.cytoband have also been included for the rat and mouse genomes.

Source

UCSC Genome Browser http://genome.ucsc.edu/

Examples

data(Hs.cytoband)
cyto <- get("1",env=Hs.cytoband)
bands <- matrix(cyto@end-cyto@start,ncol=1)
barplot(bands,col="white")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(idiogram)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: plotrix
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/idiogram/Hs.cytoband.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Hs.cytoband
> ### Title: Cytogenetic Banding information
> ### Aliases: Hs.cytoband Rn.cytoband Mm.cytoband Cf.cytoband
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Hs.cytoband)
> cyto <- get("1",env=Hs.cytoband)
> bands <- matrix(cyto@end-cyto@start,ncol=1)
> barplot(bands,col="white")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>