data included for idiogram package examples

Description

colo.eset and ucsf.chr are included for use in example plots. vai.chr is a chromLocation object included for examples in the package 'reb'. Please see the aCGH Bioconductor package for more information.

Usage

data(idiogramExample)

Source

http://www.bioconductor.org/repository/devel/package/html/aCGH.html

Examples

	library(idiogram)
	data(Hs.cytoband)
	data(idiogramExample)
	idiogram(colo.eset,ucsf.chr,chr="1")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(idiogram)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: plotrix
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/idiogram/idiogramExample.Rd_%03d_medium.png", width=480, height=480)
> ### Name: idiogramExample
> ### Title: data included for idiogram package examples
> ### Aliases: colo.eset idiogramExample ucsf.chr vai.chr
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 	library(idiogram)
> 	data(Hs.cytoband)
> 	data(idiogramExample)
> 	idiogram(colo.eset,ucsf.chr,chr="1")
Warning: zlim used is:  -0.839888 0.787702  Please see  'dlim'  to adjust.
Warning message:
In idiogram(colo.eset, ucsf.chr, chr = "1") :
  'data' needs to be a vector for this plot method: resetting to image
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>