The Organism information for illuminaHumanv2BeadID

Description

illuminaHumanv2BeadIDORGANISM is an R object that contains a single item: a character string that names the organism for which illuminaHumanv2BeadID was built. illuminaHumanv2BeadIDORGPKG is an R object that contains a chararcter vector with the name of the organism package that a chip package depends on for its gene-centric annotation.

Details

Although the package name is suggestive of the organism for which it was built, illuminaHumanv2BeadIDORGANISM provides a simple way to programmatically extract the organism name. illuminaHumanv2BeadIDORGPKG provides a simple way to programmatically extract the name of the parent organism package. The parent organism package is a strict dependency for chip packages as this is where the gene cetric information is ultimately extracted from. The full package name will always be this string plus the extension ".db". But most programatic acces will not require this extension, so its more convenient to leave it out.

Examples

  illuminaHumanv2BeadIDORGANISM
  illuminaHumanv2BeadIDORGPKG

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(illuminaHumanv2BeadID.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Hs.eg.db


illuminaHumanv2BeadID.db is an older package, and the package
  contributor no longer supports it. Please be advised that this
  package is now out of date and should not occur in future
  bioconductor releases.  For a more current package containing the
  same kind of data, please use the appropriate illumina_XXX_.db
  packages instead of the illumina_XXX_BeadID.db packages and make use
  of the new illumina_XXX_ARRAYADDRESS mapping to convert between
  BeadIDs and Illumina IDs.

*_XXX_ here refers to the species and version for this platform

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/illuminaHumanv2BeadID.db/illuminaHumanv2BeadIDORGANISM.Rd_%03d_medium.png", width=480, height=480)
> ### Name: illuminaHumanv2BeadIDORGANISM
> ### Title: The Organism information for illuminaHumanv2BeadID
> ### Aliases: illuminaHumanv2BeadIDORGANISM illuminaHumanv2BeadIDORGPKG
> ### Keywords: datasets
> 
> ### ** Examples
> 
>   illuminaHumanv2BeadIDORGANISM
[1] "Homo sapiens"
>   illuminaHumanv2BeadIDORGPKG
[1] "org.Hs.eg"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>