R: A named vector for the length of each of the chromosomes
illuminaHumanv3CHRLENGTHS
R Documentation
A named vector for the length of each of the chromosomes
Description
illuminaHumanv3CHRLENGTHS provides the length measured in base pairs for
each of the chromosomes.
Details
This is a named vector with chromosome numbers as the names and the
corresponding lengths for chromosomes as the values.
Total lengths of chromosomes were derived by calculating the
number of base pairs on the sequence string for each chromosome.
Examples
tt <- illuminaHumanv3CHRLENGTHS
# Length of chromosome 1
tt["1"]
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(illuminaHumanv3.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: org.Hs.eg.db
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/illuminaHumanv3.db/illuminaHumanv3CHRLENGTHS.Rd_%03d_medium.png", width=480, height=480)
> ### Name: illuminaHumanv3CHRLENGTHS
> ### Title: A named vector for the length of each of the chromosomes
> ### Aliases: illuminaHumanv3CHRLENGTHS
> ### Keywords: datasets
>
> ### ** Examples
>
> tt <- illuminaHumanv3CHRLENGTHS
> # Length of chromosome 1
> tt["1"]
1
249250621
>
>
>
>
>
> dev.off()
null device
1
>