supplemental data extracts on existing evidence of transcription in yeast

Description

supplemental data extracts on existing evidence of transcription in yeast

Usage

data(leeUnn)

Format

A data frame with 54822 observations on the following 11 variables.

chr

a numeric vector

start

a numeric vector

end

a numeric vector

strand

a numeric vector

lengthWithoutMask

a numeric vector

length

a numeric vector

lambda

a numeric vector

background5

a logical vector

background20

a logical vector

reads

a numeric vector

study

a factor with levels David Davis Miura Nagalakshmi

Source

from Lee et al PLoS genetics December 2008 Volume 4 Issue 12 e1000299 supplemental data

information on unnannotated transcripts for which some evidence of transcription was obtained in this experiment

Examples

data(leeUnn)
leeUnn[1:5,]

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(leeBamViews)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: stats4
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector
Loading required package: BSgenome
Loading required package: rtracklayer
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/leeBamViews/leeUnn.Rd_%03d_medium.png", width=480, height=480)
> ### Name: leeUnn
> ### Title: supplemental data extracts on existing evidence of transcription
> ###   in yeast
> ### Aliases: leeUnn
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(leeUnn)
> leeUnn[1:5,]
  chr  start    end strand lengthWithoutMask length       lambda background5
1   1  70855  71018      1               164    158 3.141430e-09       FALSE
2   1 199135 199890      1               756    756 1.725768e-08       FALSE
3   1  92353  92508      1               156    156 1.454494e-08       FALSE
4   1   9468   9684      1               217    217 6.535167e-10       FALSE
5   1 185919 186281      1               363    363 1.914282e-08       FALSE
  background20 reads       study
1        FALSE     7 Nagalakshmi
2        FALSE   184 Nagalakshmi
3        FALSE    32 Nagalakshmi
4        FALSE     2 Nagalakshmi
5        FALSE    98 Nagalakshmi
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>