Example Illumina Infinium Methylation titration data in MethyLumiM class

Description

An example Illumina Infinium Methylation27k dataset, which includes a titration dataset

Usage

data(example.methyTitration)

Details

The example dataset is a titration dataset. It includes 8 samples: "A1", "A2", "B1", "B2", "C1", "C2", "D" and "E". They are mixtures of Sample A (a B-lymphocyte sample) and Sample B (is (a colon cancer sample from a female donor) at five different titration ratios: 100:0 (A), 90:10 (C), 75:25 (D), 50:50 (E) and 0:100 (B).

To save storage space, we randomly subset 10000 CpG sites among about 27000 measured CpG sites.

Examples

data(example.methyTitration)
sampleNames(example.methyTitration)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> library(lumi)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/lumi/example.methyTitration.Rd_%03d_medium.png", width=480, height=480)
> ### Name: example.methyTitration
> ### Title: Example Illumina Infinium Methylation titration data in
> ###   MethyLumiM class
> ### Aliases: example.methyTitration
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(example.methyTitration)
> sampleNames(example.methyTitration)
[1] "A1" "B1" "C1" "A2" "B2" "C2" "D"  "E" 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>