The massi test dataset

Description

This data.frame object contains expression data for 60 samples and 1026 probes

Usage

data(massi.test.dataset)

Format

A data frame with 1026 observations on the following 60 variables.

S1

a numeric vector

S2

a numeric vector

S3

a numeric vector

S4

a numeric vector

S5

a numeric vector

S6

a numeric vector

S7

a numeric vector

S8

a numeric vector

S9

a numeric vector

S10

a numeric vector

S11

a numeric vector

S12

a numeric vector

S13

a numeric vector

S14

a numeric vector

S15

a numeric vector

S16

a numeric vector

S17

a numeric vector

S18

a numeric vector

S19

a numeric vector

S20

a numeric vector

S21

a numeric vector

S22

a numeric vector

S23

a numeric vector

S24

a numeric vector

S25

a numeric vector

S26

a numeric vector

S27

a numeric vector

S28

a numeric vector

S29

a numeric vector

S30

a numeric vector

S31

a numeric vector

S32

a numeric vector

S33

a numeric vector

S34

a numeric vector

S35

a numeric vector

S36

a numeric vector

S37

a numeric vector

S38

a numeric vector

S39

a numeric vector

S40

a numeric vector

S41

a numeric vector

S42

a numeric vector

S43

a numeric vector

S44

a numeric vector

S45

a numeric vector

S46

a numeric vector

S47

a numeric vector

S48

a numeric vector

S49

a numeric vector

S50

a numeric vector

S51

a numeric vector

S52

a numeric vector

S53

a numeric vector

S54

a numeric vector

S55

a numeric vector

S56

a numeric vector

S57

a numeric vector

S58

a numeric vector

S59

a numeric vector

S60

a numeric vector

Details

This test dataset is in the data.frame format with sample names as column names and probe id's as row.names. This test dataset is a subset of an emperical dataset obtained from Illumina human-6 v2.0 expression beadchip ararys.

Source

Data were adapted from dataset GSE25906 <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25906>

Examples

data(massi.test.dataset)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(massiR)
Loading required package: cluster
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: diptest
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/massiR/massi.test.dataset.Rd_%03d_medium.png", width=480, height=480)
> ### Name: massi.test.dataset
> ### Title: The massi test dataset
> ### Aliases: massi.test.dataset
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(massi.test.dataset)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>