R: Data frame describing loci on the 27 and 450k arrays.
CpGs
R Documentation
Data frame describing loci on the 27 and 450k arrays.
Description
Data frame describing loci on the 27 and 450k arrays.
Usage
data(CpGs)
Examples
data(CpGs)
head(CpGs)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(methylumi)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: scales
Loading required package: reshape2
Loading required package: ggplot2
Loading required package: matrixStats
matrixStats v0.50.2 (2016-04-24) successfully loaded. See ?matrixStats for help.
Attaching package: 'matrixStats'
The following objects are masked from 'package:Biobase':
anyMissing, rowMedians
Loading required package: FDb.InfiniumMethylation.hg19
Loading required package: GenomicFeatures
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Loading required package: org.Hs.eg.db
Loading required package: minfi
Loading required package: lattice
Loading required package: SummarizedExperiment
Attaching package: 'SummarizedExperiment'
The following object is masked from 'package:matrixStats':
rowRanges
Loading required package: Biostrings
Loading required package: XVector
Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/methylumi/CpGs.Rd_%03d_medium.png", width=480, height=480)
> ### Name: CpGs
> ### Title: Data frame describing loci on the 27 and 450k arrays.
> ### Aliases: CpGs
> ### Keywords: datasets
>
> ### ** Examples
>
> data(CpGs)
> head(CpGs)
CpGs design.27k design.450k type random
cg00035864 1 <NA> II CpG FALSE
cg00050873 3 <NA> I CpG FALSE
cg00061679 1 <NA> II CpG FALSE
cg00063477 2 <NA> II CpG FALSE
cg00121626 1 <NA> II CpG FALSE
cg00212031 5 <NA> I CpG FALSE
>
>
>
>
>
> dev.off()
null device
1
>