R: A sample data of beads based microRNA microarray
OX40Luminex
R Documentation
A sample data of beads based microRNA microarray
Description
A sample data of Luminex beads based microRNA microarray.
Usage
data(OX40Luminex)
Format
A data frame with 3640 rows and 8 columns (variables).
Gene
character
MicroRNA names.
Treat0
numeric
measures under treatment with code '0'
Treat1
numeric
measures under treatment with code '1'
Treat2
numeric
measures under treatment with code '2'
Treat3
numeric
measures under treatment with code '3'
Background
numeric
measures of background noises
Sample
numeric
sample id.
Pool
numeric
Pool id.
An object lum of class luminx.
References
Wang, B., Zhang, S-G., Wang, X-F., Tan, M. and Xi, Y. (2012) "Testing
for differentially-expressed microRNAs with errors-in-variables
nonparametric regression", PLoS ONE 7(5):
e37537. doi:10.1371/journal.pone.0037537.
Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based
microRNA expression data: a measurement error model-based approach",
Bioinformatics, 27(11), 1506-1512.
Wang, B., Howell, P., Bruheim, S. Ju, J, Owen, L.B., Fodstad, O. and
Xi, Y. (2011). "Systematic Evaluation of Three microRNA Profiling
Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR
Array", PLoS ONE 6(2): e17167.
Wang, B. and Wertelecki, W. (2012) "Density Estimation for Data With
Rounding Errors", Computational Statistics and Data Analysis, (in
press). doi: 10.1016/j.csda.2012.02.016. link
Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based
microRNA expression data: a measurement error model-based approach",
Bioinformatics, 27(11), 1506-1512.
Wang, X-F. and Wang, B. (2011) "Deconvolution Estimation in
Measurement Error Models: The R Package decon", Journal of Statistical
Software, 39(10), 1-24.