A set of mouse microRNA names and their corresponding known targets
given as ensembl Transcript IDs.
Usage
data(mmTargets)
Format
A data frame of microRNAs and their target ensembl IDs as recovered
from miRBase. Additional columns are also provided to give the
Chromosome as well as the start and end position of the microRNA
binding site, and the strand orientation (plus or minus).
Details
Each mapping represents a different mouse microRNA, paired with one
viable target. Other information about where the microRNA binds is
also included. Some microRNAs have multiple targets and so some
microRNAs may be represented more than once.
miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.
NAR, 2006, 34, Database Issue, D140-D144
The microRNA Registry.
Griffiths-Jones S.
NAR, 2004, 32, Database Issue, D109-D111
Examples
data(mmTargets)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(microRNA)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/microRNA/mmTargets.Rd_%03d_medium.png", width=480, height=480)
> ### Name: mmTargets
> ### Title: Mouse microRNAs and their target IDs
> ### Aliases: mmTargets
> ### Keywords: datasets
>
> ### ** Examples
>
> data(mmTargets)
>
>
>
>
>
> dev.off()
null device
1
>