Top table of preprocessed mRNA of GSE43592 dataset.

Description

A data.frame with the Log fold change and p-value of preprocessed mRNA expression of GSE43592 dataset.

Usage

data(GSE43592_mRNA)

Value

A data frame with 19611 mRNAs with the following 8 variables: entre, ID, logFC, AveExpr, t, P.Value, adj.P.Val, B.

Source

Raw data obtained from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43592 and preprocessed with the limma package version 3.24.0.

References

M. Jernas, C. Malmestrom, M. Axelsson, I. Nookaew, H. Wadenvik, J. Lycke, and B. Olsson,MicroRNA regulate immune pathways in t-cells in multiple sclerosis (MS), BMC immunology, vol. 14, p. 32, 2013.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W and Smyth GK (2015). limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Research, 43(7), pp. e47.

Examples

data(GSE43592_mRNA)
head(GSE43592_mRNA)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mirIntegrator)

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mirIntegrator/GSE43592_mRNA.Rd_%03d_medium.png", width=480, height=480)
> ### Name: GSE43592_mRNA
> ### Title: Top table of preprocessed mRNA of GSE43592 dataset.
> ### Aliases: GSE43592_mRNA
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GSE43592_mRNA)
> head(GSE43592_mRNA)
           entrez     ID      logFC   AveExpr         t      P.Value
90120   hsa:90120  90120 -0.8316302  7.701167 -8.825676 1.293905e-08
58190   hsa:58190  58190 -0.4939118  9.321397 -8.727214 1.567065e-08
339344 hsa:339344 339344 -0.4851084  7.218859 -8.570366 2.131712e-08
79961   hsa:79961  79961 -0.6391549 10.165545 -8.154211 4.899082e-08
80198   hsa:80198  80198 -0.4885382  8.462746 -8.031414 6.290095e-08
126308 hsa:126308 126308 -0.6643832  6.906211 -7.830279 9.513345e-08
          adj.P.Val        B
90120  0.0001393500 9.670574
58190  0.0001393500 9.499904
339344 0.0001393500 9.224944
79961  0.0002401898 8.476881
80198  0.0002467101 8.250967
126308 0.0003109437 7.875815
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>