Top table of preprocessed miRNA of GSE43592 dataset.

Description

A data.frame with the Log fold change and p-value of preprocessed miRNA expression of GSE43592 dataset.

Usage

data(GSE43592_miRNA)

Value

A data frame with 881 miRNAs with the following 8 variables: entre, ID, logFC, AveExpr, t, P.Value, adj.P.Val, B.

Source

Raw data obtained from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43592 and preprocessed with the limma package version 3.24.0.

References

M. Jernas, C. Malmestrom, M. Axelsson, I. Nookaew, H. Wadenvik, J. Lycke, and B. Olsson,MicroRNA regulate immune pathways in t-cells in multiple sclerosis (MS), BMC immunology, vol. 14, p. 32, 2013.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W and Smyth GK (2015). limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Research, 43(7), pp. e47.

Examples

data(GSE43592_miRNA)
head(GSE43592_miRNA)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mirIntegrator)

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mirIntegrator/GSE43592_miRNA.Rd_%03d_medium.png", width=480, height=480)
> ### Name: GSE43592_miRNA
> ### Title: Top table of preprocessed miRNA of GSE43592 dataset.
> ### Aliases: GSE43592_miRNA
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GSE43592_miRNA)
> head(GSE43592_miRNA)
                     entrez            ID      logFC   AveExpr         t
hsa-mir-1260b hsa-mir-1260b hsa-mir-1260b -2.0857457 1.7309170 -7.264180
hsa-mir-197     hsa-mir-197   hsa-mir-197 -2.2761535 1.9532667 -6.357996
hsa-mir-494     hsa-mir-494   hsa-mir-494 -2.7291358 1.7350999 -5.843920
hsa-mir-92b     hsa-mir-92b   hsa-mir-92b -0.7329700 0.5266679 -4.904205
hsa-mir-1910   hsa-mir-1910  hsa-mir-1910 -0.5211011 0.4883672 -4.867813
hsa-miR-30c     hsa-miR-30c   hsa-miR-30c -2.6376760 3.3918319 -4.284840
                   P.Value    adj.P.Val         B
hsa-mir-1260b 4.871989e-07 0.0004292223 6.3854384
hsa-mir-197   3.258465e-06 0.0014353539 4.6380751
hsa-mir-494   1.003790e-05 0.0029477963 3.5925580
hsa-mir-92b   8.465696e-05 0.0162264833 1.5967540
hsa-mir-1910  9.209128e-05 0.0162264833 1.5177388
hsa-miR-30c   3.582802e-04 0.0526074822 0.2421889
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>