raw expression data for evaluation of outlier detection algorithms

Description

raw expression data for evaluation of outlier detection algorithms

Usage

data(s12c); data(ILM1)

Format

s12c is an AffyBatch created from SpikeIn U133a, with first two samples contaminated. ILM1 is the result of lumi::lumiR applied to the CSV file supplied by Illumina Inc. for the MAQC study (19 arrays).

Examples

data(s12c)
s12c

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mvoutData)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: affy
Loading required package: lumi
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)

Attaching package: 'lumi'

The following objects are masked from 'package:affy':

    MAplot, plotDensity

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mvoutData/s12c.Rd_%03d_medium.png", width=480, height=480)
> ### Name: s12c
> ### Title: raw expression data for evaluation of outlier detection
> ###   algorithms
> ### Aliases: s12c ILM1
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(s12c)
> s12c

AffyBatch object
size of arrays=712x712 features (75283 kb)
cdf=hgu133atag (22300 affyids)
number of samples=12
number of genes=22300
annotation=hgu133atag
notes=
Warning messages:
1: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu133atagcdf' 
2: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu133atagcdf' 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>