R: Toy example for using 'NetGSA' on a two-class test with...
netgsaex2
R Documentation
Toy example for using NetGSA on a two-class test with undirected networks
Description
This dataset contains an example for using Network-based Gene Set Analysis on a two-sample test with undirected networks.
Usage
data("netgsaex2")
Format
A list with components
A
A list ot two weighted adjacency matrices.
x
The p x n data matrix.
y
The vector of class indicators of length n.
B
The npath by p indicator matrix for pathways.
References
Ma, J., Shojaie, A. & Michailidis, G. (2014). Network-based pathway enrichment analysis with incomplete network information. http://arxiv.org/abs/1411.7919
Examples
data(netgsaex2)
A = netgsaex2$A
B = netgsaex2$B
x = netgsaex2$x
y = netgsaex2$y
# -Not-run-
# fit = NetGSA(A, x, y, B, lklMethod="REML", directed=FALSE)