R: Example intensities from Tiling Microarray nucleosome...
nucleosome_tiling
R Documentation
Example intensities from Tiling Microarray nucleosome positioning experiment
Description
Some bases from S.cerevisiae tiling microarray where mononucleosomes were sequenced and hybridizated
with histone-free naked DNA. The intensity is the normalized ratio between the intensities from nucleosomic and naked DNA.
Due to the difficulty of providing a raw file, this file has been preprocessed. See details.
Usage
data(nucleosome_tiling)
Format
numeric vector with the intensities.
Details
The raw .CEL files from Affymetrix S.Cerevisiae Tilling 1.0R Array (3 nucleosomal + 3 naked DNA) has been merged using package Starr and the resulting ExpressionSet object has been passed to processTilingArray function from this package as follows: