Welcome to the org.Dm.eg.db annotation Package. This is an
organism specific package. The purpose is to provide detailed
information about the species abbreviated in the second part of the
package name org.Dm.eg.db. This package is updated biannually.
Objects in this package are accessed using the select() interface.
See ?select in the AnnotationDbi package for details.
See Also
AnnotationDb-class for use of
keys(), columns() and select().
Examples
## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.
columns(org.Dm.eg.db)
## Bimap interface:
## The 'old style' of interacting with these objects is manipulation as
## bimaps. While this approach is still available we strongly encourage the
## use of select().
ls("package:org.Dm.eg.db")
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> library(org.Dm.eg.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/org.Dm.eg.db/org.Dm.egBASE.Rd_%03d_medium.png", width=480, height=480)
> ### Name: org.Dm.eg.db
> ### Title: Bioconductor annotation data package
> ### Aliases: org.Dm.eg.db org.Dm.eg
> ### Keywords: datasets
>
> ### ** Examples
>
> ## select() interface:
> ## Objects in this package can be accessed using the select() interface
> ## from the AnnotationDbi package. See ?select for details.
> columns(org.Dm.eg.db)
[1] "ACCNUM" "ALIAS" "ENSEMBL" "ENSEMBLPROT" "ENSEMBLTRANS"
[6] "ENTREZID" "ENZYME" "EVIDENCE" "EVIDENCEALL" "FLYBASE"
[11] "FLYBASECG" "FLYBASEPROT" "GENENAME" "GO" "GOALL"
[16] "MAP" "ONTOLOGY" "ONTOLOGYALL" "PATH" "PMID"
[21] "REFSEQ" "SYMBOL" "UNIGENE" "UNIPROT"
>
> ## Bimap interface:
> ## The 'old style' of interacting with these objects is manipulation as
> ## bimaps. While this approach is still available we strongly encourage the
> ## use of select().
> ls("package:org.Dm.eg.db")
[1] "org.Dm.eg" "org.Dm.eg.db"
[3] "org.Dm.egACCNUM" "org.Dm.egACCNUM2EG"
[5] "org.Dm.egALIAS2EG" "org.Dm.egCHR"
[7] "org.Dm.egCHRLENGTHS" "org.Dm.egCHRLOC"
[9] "org.Dm.egCHRLOCEND" "org.Dm.egENSEMBL"
[11] "org.Dm.egENSEMBL2EG" "org.Dm.egENSEMBLPROT"
[13] "org.Dm.egENSEMBLPROT2EG" "org.Dm.egENSEMBLTRANS"
[15] "org.Dm.egENSEMBLTRANS2EG" "org.Dm.egENZYME"
[17] "org.Dm.egENZYME2EG" "org.Dm.egFLYBASE"
[19] "org.Dm.egFLYBASE2EG" "org.Dm.egFLYBASECG"
[21] "org.Dm.egFLYBASECG2EG" "org.Dm.egFLYBASEPROT"
[23] "org.Dm.egFLYBASEPROT2EG" "org.Dm.egGENENAME"
[25] "org.Dm.egGO" "org.Dm.egGO2ALLEGS"
[27] "org.Dm.egGO2EG" "org.Dm.egMAP"
[29] "org.Dm.egMAP2EG" "org.Dm.egMAPCOUNTS"
[31] "org.Dm.egORGANISM" "org.Dm.egPATH"
[33] "org.Dm.egPATH2EG" "org.Dm.egPMID"
[35] "org.Dm.egPMID2EG" "org.Dm.egREFSEQ"
[37] "org.Dm.egREFSEQ2EG" "org.Dm.egSYMBOL"
[39] "org.Dm.egSYMBOL2EG" "org.Dm.egUNIGENE"
[41] "org.Dm.egUNIGENE2EG" "org.Dm.egUNIPROT"
[43] "org.Dm.eg_dbInfo" "org.Dm.eg_dbconn"
[45] "org.Dm.eg_dbfile" "org.Dm.eg_dbschema"
>
>
>
>
>
> dev.off()
null device
1
>