Data from Fabre et al. 2015

Description

Duplicated experimental data from Fabre et al. 2015, Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. Protein complexes were separated by glycerol density gradient centrifugation. Proteins have been quantified by label-free (iBAQ) mass spectrometry.

Usage

data("fabre2015r1")
data("fabre2015r2")

References

Fabre B, Lambour T, Garrigues L, Amalric F, Vigneron N, Menneteau T, Stella A, Monsarrat B, Van den Eynde B, Burlet-Schiltz O, Bousquet-Dubouch MP. Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. Mol Syst Biol. 2015 Jan 5;11(1):771. doi: 10.15252/msb.20145497. PubMed PMID: 25561571.

Examples

data(fabre2015r1)
experimentData(fabre2015r1)
library("pRoloc")
plot2D(fabre2015r1)
addLegend(fabre2015r1, where = "topright")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(pRolocdata)
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics

This is MSnbase version 1.20.7 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:stats':

    smooth

The following object is masked from 'package:base':

    trimws


This is pRolocdata version 1.10.0.
Use 'pRolocdata()' to list available data sets.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pRolocdata/fabre2015.Rd_%03d_medium.png", width=480, height=480)
> ### Name: fabre2015r1
> ### Title: Data from Fabre et al. 2015
> ### Aliases: fabre2015r1 fabre2015r2 fabre2015
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(fabre2015r1)
> experimentData(fabre2015r1)
Experiment data
  Experimenter name: Bertrand Fabre et al. 
  Laboratory:  
  Contact information:  
  Contact email:  
  Title: Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. 
  URL:  
  PMIDs: 25561571 

  Abstract: A 159 word abstract is available. Use 'abstract' method.
  Information is available on: samples 
  notes:
   Quantification:
Label-Free (iBAQ)
   Fractionation:
Glycerol Density Gradient Centrifugation
> library("pRoloc")
Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: cluster

This is pRoloc version 1.12.4 
  Read '?pRoloc' and references therein for information
  about the package and how to get started.

> plot2D(fabre2015r1)
Warning message:
In plot2D(fabre2015r1) : Removed 429 row(s) with 'NA' values.
> addLegend(fabre2015r1, where = "topright")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>