LOPIT data from Hall et al. 2009

Description

This is the data from Hall et al. The Organelle Proteome of the DT40 Lymphocyte Cell Line Mol Cell Proteomics. 2009 Jun;8(6):1295-305. (PMID: PMC2690488).

Usage

data(hall2009)

Format

An instance of class MSnSet from package MSnbase.

Details

See reference.

Source

http://www.mcponline.org/content/8/6/1295.abstract

References

Hall SL, Hester S, Griffin JL, Lilley KS, Jackson AP. The organelle proteome of the DT40 lymphocyte cell line Mol Cell Proteomics. 2009 Jun;8(6):1295-305. doi: 10.1074/mcp.M800394-MCP200. Epub 2009 Jan 30. PubMed PMID: 19181659; PubMed Central PMCID: PMC2690488.

Examples

data(hall2009)
pData(hall2009)
library("pRoloc")
plot2D(hall2009)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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Platform: x86_64-pc-linux-gnu (64-bit)

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> library(pRolocdata)
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics

This is MSnbase version 1.20.7 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:stats':

    smooth

The following object is masked from 'package:base':

    trimws


This is pRolocdata version 1.10.0.
Use 'pRolocdata()' to list available data sets.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pRolocdata/hall2009.Rd_%03d_medium.png", width=480, height=480)
> ### Name: hall2009
> ### Title: LOPIT data from Hall et al. 2009
> ### Aliases: hall2009
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(hall2009)
> pData(hall2009)
        fractions replicate
AC114.1         1         1
AC115.1         4         1
AC116.1     13+14         1
AC117.1        21         1
BD114.1         1         1
BD115.1      9+10         1
BD116.1        16         1
BD117.1        18         1
AC114.2         1         2
AC115.2         4         2
AC116.2     13+14         2
AC117.2        21         2
BD114.2         1         2
BD115.2      9+10         2
BD116.2        16         2
BD117.2        18         2
> library("pRoloc")
Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: cluster

This is pRoloc version 1.12.4 
  Read '?pRoloc' and references therein for information
  about the package and how to get started.

> plot2D(hall2009)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>