Data from Havugimana et al. 2012

Description

Data from Havugimana et al. 2012, A census of human soluble protein complexes. The protein complexes were fractionated by ion exchange chromatography, Isoelectric focusing and sucrose density gradient centrifugation. Proteins were quantified by spectral counting.

Usage

data("havugimana2012")

References

Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, Dar VU, Bezginov A, Clark GW, Wu GC, Wodak SJ, Tillier ER, Paccanaro A, Marcotte EM, Emili A. A census of human soluble protein complexes. Cell. 2012 Aug 31;150(5):1068-81. doi: 10.1016/j.cell.2012.08.011. PubMed PMID: 22939629; PubMed Central PMCID: PMC3477804.

Examples

data(havugimana2012)
experimentData(havugimana2012)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(pRolocdata)
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics

This is MSnbase version 1.20.7 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:stats':

    smooth

The following object is masked from 'package:base':

    trimws


This is pRolocdata version 1.10.0.
Use 'pRolocdata()' to list available data sets.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pRolocdata/havugimana2012.Rd_%03d_medium.png", width=480, height=480)
> ### Name: havugimana2012
> ### Title: Data from Havugimana et al. 2012
> ### Aliases: havugimana2012
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(havugimana2012)
> experimentData(havugimana2012)
Experiment data
  Experimenter name: Havugimana PC et al. 
  Laboratory:  
  Contact information:  
  Contact email:  
  Title: A census of human soluble protein complexes 
  URL:  
  PMIDs: 22939629 

  Abstract: A 144 word abstract is available. Use 'abstract' method.
  Information is available on: samples 
  notes:
   Quantification:
Label-Free (Spectral Counting)
   Fractionation:
HCW (Dual Heparin-IEX)
      SAF (Single phase-Heparin)
      TCS (Triple phase-IEX)
      SGF (Sucrose gradient)
      IEF_pH 5 to 8 (Isoelectric focusing, pH 5 to 8)
      IEF_pH 3 to 10 (Isoelectric focusing, pH 3 to 10)
      WAX (Single phase-IEX)
   NOTE:
extensive fractionation
      very high number of missing values
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>