Data from Kirkwood et al. 2013.

Description

Data from Kirkwood et al. 2013, Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Protein complexes were separated by size exclusion chromatography and proteins were quantified by spectral counting.

Usage

data("kirkwood2013")

References

Kirkwood KJ, Ahmad Y, Larance M, Lamond AI. Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Mol Cell Proteomics. 2013 Dec;12(12):3851-73. doi: 10.1074/mcp.M113.032367. Epub 2013 Sep 16. PubMed PMID: 24043423; PubMed Central PMCID: PMC3861729.

Examples

data(kirkwood2013)
experimentData(kirkwood2013)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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Platform: x86_64-pc-linux-gnu (64-bit)

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> library(pRolocdata)
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics

This is MSnbase version 1.20.7 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:stats':

    smooth

The following object is masked from 'package:base':

    trimws


This is pRolocdata version 1.10.0.
Use 'pRolocdata()' to list available data sets.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pRolocdata/kirkwood2013.Rd_%03d_medium.png", width=480, height=480)
> ### Name: kirkwood2013
> ### Title: Data from Kirkwood et al. 2013.
> ### Aliases: kirkwood2013
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(kirkwood2013)
> experimentData(kirkwood2013)
Experiment data
  Experimenter name: Kirkwood KJ1, Ahmad Y, Larance M and Lamond AI 
  Laboratory:  
  Contact information:  
  Contact email:  
  Title: Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. 
  URL:  
  PMIDs: 24043423 

  Abstract: A 233 word abstract is available. Use 'abstract' method.
  Information is available on: samples 
  notes:
   Quantification:
Label-Free (Spectral Counting)
   Fractionation:
Size Exclusion Chromatography
   Note:
High redundancy of proteins due to the database search (several isoforms i
dentified for a unique protein)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>