Read counts per exon, or per gene,from RNA-seq samples

Description

pasillaExons is an ExonCountSet object containing exon counts for each of the samples from Brooks et al.'s RNA-seq data. pasillaGenes is an CountDataSet object with gene level counts. dxd is a DEXSeqDataSet object with exon counts, the ExonCountSet has been deprecated and substituted by the object DEXSeqDataSet the object.

Usage

data("pasillaExons")
data("pasillaGenes")
data("dxd")

Format

ExonCountSet, CountDataSet

Source

Processed data from NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.

References

Brooks et al. Conservation of an RNA regulatory map between Drosophila and mammals. Genome Research, 2010

Results