An annotation data object that maps Gene Ontology (GO) identifiers to Reactome database identifiers

Description

reactomeGO2REACTOMEID maps GO identifiers to Reactome database identifiers

Details

This is an R object containing key and value pairs. Keys are GO identifiers and values are Reactome database identifiers. Values are vectors of length 1.

Mappings were based on data provided by: Reactome http://www.reactome.org/download/current/sql.gz & http://www.reactome.org/download/current/sql_dn.gz With a date stamp from the source of: 2010-Dec-21

References

http://www.reactome.org/

Examples

	xx <- as.list(reactomeGO2REACTOMEID)
	if(length(xx) > 0){
		# Get the value of the first key
		xx[[1]]
		# Get values for a few keys
		if(length(xx) >= 3){
			xx[1:3]
		}
	}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(reactome.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/reactome.db/reactomeGO2REACTOMEID.Rd_%03d_medium.png", width=480, height=480)
> ### Name: reactomeGO2REACTOMEID
> ### Title: An annotation data object that maps Gene Ontology (GO)
> ###   identifiers to Reactome database identifiers
> ### Aliases: reactomeGO2REACTOMEID
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 	xx <- as.list(reactomeGO2REACTOMEID)
> 	if(length(xx) > 0){
+ 		# Get the value of the first key
+ 		xx[[1]]
+ 		# Get values for a few keys
+ 		if(length(xx) >= 3){
+ 			xx[1:3]
+ 		}
+ 	}
$`GO:0019054`
[1] "168276" "168276"

$`GO:0004135`
 [1] "71593"   "5710833" "5721766" "5754365" "5814532" "5872621" "5934029"
 [8] "5994373" "6054030" "6098597" "6142316" "6198837" "71593"   "5710833"
[15] "5721766" "5754365" "5814532" "5872621" "5934029" "5994373" "6054030"
[22] "6098597" "6142316" "6198837"

$`GO:0004001`
 [1] "109624"  "5684318" "5702423" "5712642" "5724621" "5757688" "5817830"
 [8] "5876136" "5937421" "5998263" "6056607" "6101477" "6145887" "6203363"
[15] "6279930" "6329900" "6357163" "109624"  "5684318" "5702423" "5712642"
[22] "5724621" "5757688" "5817830" "5876136" "5937421" "5998263" "6056607"
[29] "6101477" "6145887" "6203363" "6279930" "6329900" "6357163"

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>