R: An annotation data object that maps Reactome database...
reactomeREACTOMEID2GO
R Documentation
An annotation data object that maps Reactome database identifiers to
Gene Ontology identifiers
Description
reactomeREACTOMEID2GO maps Reactome database identifiers to Gene Ontoloty
(GO) identifiers
Details
This is an R object containing key and value pairs. Keys are
Reactome database identifiers and values are GO identifiers. Values are vectors of
length 1.
Mappings were based on data provided by: Reactome
http://www.reactome.org/download/current/sql.gz & http://www.reactome.org/download/current/sql_dn.gz
With a date stamp from the source of: 2010-Dec-21
xx <- as.list(reactomeREACTOMEID2GO)
if(length(xx) > 0){
# Get the value of the first key
xx[[1]]
# Get values for a few keys
if(length(xx) >= 3){
xx[1:3]
}
}
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(reactome.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/reactome.db/reactomeREACTOMEID2GO.Rd_%03d_medium.png", width=480, height=480)
> ### Name: reactomeREACTOMEID2GO
> ### Title: An annotation data object that maps Reactome database
> ### identifiers to Gene Ontology identifiers
> ### Aliases: reactomeREACTOMEID2GO
> ### Keywords: datasets
>
> ### ** Examples
>
> xx <- as.list(reactomeREACTOMEID2GO)
> if(length(xx) > 0){
+ # Get the value of the first key
+ xx[[1]]
+ # Get values for a few keys
+ if(length(xx) >= 3){
+ xx[1:3]
+ }
+ }
$`168276`
[1] "GO:0019054" "GO:0019054"
$`71593`
[1] "GO:0004135" "GO:0004135"
$`5710833`
[1] "GO:0004135" "GO:0004135"
>
>
>
>
>
> dev.off()
null device
1
>