R: Reference and genomic sample regions for recoup testing
recoup_test_data
R Documentation
Reference and genomic sample regions for recoup testing
Description
The testing data package containes a small gene set, a
design data frame, some genomic regions and an input
object for testing of recoup with ChIP-Seq and RNA-Seq
data. Specifically:
test.input: A small data set which
contains 10000 reads from H4K20me1 ChIP-Seq
data from WT adult mice and Set8 (Pr-Set7) KO
mice. The tissue is liver.
test.genome: A small gene set (100
genes) and their coordinates from mouse mm9
chromosome 12.
test.design: A data frame containing the 100
above genes categorized according to expression and
strand.
test.exons: A GRangesList containing
the exons of the 100 above genes for use with
recoup RNA-Seq mode.
Format
data.frame and list objects whose format
is accepted by recoup.
Author(s)
Panagiotis Moulos
Source
Personal communication with the Talianids lab at BSRC
'Alexander Fleming'. Unpublished data.