Last data update: 2014.03.03

R: Position-weight matrix for TATA-box binding protein motif
TBPpwmR Documentation

Position-weight matrix for TATA-box binding protein motif

Description

This is a matrix object representing a position-weight matrix (PWM) for TATA-box binding protein motif. The scores in the matrix correspond to log2 ratio between probability of observing base b (rows) at position i (columns) and background probability of base b. This PWM has been derived using position frequency matrix from Jaspar database. It is intended to be used as an input data in running examples from seqPattern package help pages.

Usage

data(TBPpwm)

Format

A matrix object

Value

A matrix object

Results