These parameters, which are passed to the MCMC and MCMC_BB functions, control the operation of the MCMC. They specify the number of generations over which the MCMC runs; the scales of the tuning parameters (stp) for all parameters updated via random-walk samplers; the save, print, and sample frequency of the chain, and the output file names.
The allelic counts, sample sizes, geographic distances, ecological distances, and population metadata from the 38 human populations used in example BEDASSLE analyses, subsetted from the Human Genome Diversity Panel (HGDP) dataset.
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