KEGG.db
(Package: KEGG.db) :
Bioconductor annotation data package
Welcome to the KEGG.db annotation Package. The purpose of this package was to provide detailed information about the latest version of the KEGG pathway databases. But a number of years ago, KEGG changed their policy about sharing their data and so this package is no longer allowed to be current. Users who are interested in a more current pathway data are encouraged to look at the KEGGREST or reactome.db packages.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGG, KEGG.db
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KEGGENZYMEID2GO
(Package: KEGG.db) :
An annotation data object that maps Enzyme Commission numbers to
KEGGENZYMEID2GO maps Enzyme Commission numbers to Gene Ontoloty (GO) identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGENZYMEID2GO
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KEGGEXTID2PATHID
(Package: KEGG.db) :
An annotation data object that maps Entrez Gene or Open Reading Frame
KEGGEXTID2PATHID maps Entrez Gene (for human, mouse, and rat) and Open Reading Frame (for yeast) identifiers to KEGG pathway identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGEXTID2PATHID
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KEGGGO2ENZYMEID
(Package: KEGG.db) :
An annotation data object that maps Gene Ontology (GO) identifiers to
KEGGGO2ENZYMEID maps GO identifiers to Enzyme Commission numbers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGGO2ENZYMEID
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KEGGMAPCOUNTS
(Package: KEGG.db) :
Number of mapped keys for the maps in package KEGG.db
KEGGMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package KEGG.db.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGMAPCOUNTS
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KEGGPATHID2EXTID
(Package: KEGG.db) :
An annotation data object that maps KEGG pathway identifiers to Entrez Gene
KEGGPATHID2EXTID maps KEGG pathway identifiers to Entrez Gene (for human, mouse, and rat) or Open Reading Frame (for yeast) identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGPATHID2EXTID
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KEGGPATHID2NAME
(Package: KEGG.db) :
An annotation data object that maps KEGG pathway identifiers to
KEGGPATHID2NAME maps KEGG pathway identifiers to pathway names used by KEGG for various pathways
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGPATHID2NAME
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KEGGPATHNAME2ID
(Package: KEGG.db) :
An annotation data object that maps KEGG pathway names to
KEGGPATHNAME2ID maps KEGG pathway names to pathway identifiers used by KEGG for various pathways
● Data Source:
BioConductor
● Keywords: datasets
● Alias: KEGGPATHNAME2ID
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KEGG_dbconn
(Package: KEGG.db) :
Collect information about the package annotation DB
Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: KEGG_dbInfo, KEGG_dbconn, KEGG_dbfile, KEGG_dbschema
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