Last data update: 2014.03.03

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data:davidTiling (Package: davidTiling) : Dataset of class eSet with the raw 'CEL file' intensities

The data are from an experiment that used Affymetrix Scerevisiaetiling chips from 2004, which where custom-made for the Stanford Genome Center. The chips tile the complete genome of S. cerevisiae in steps of 8 bases, separately for each strand of each chromosome. The two tiles for one chromosome (Watson and Crick strands) are offset by 4 bases.
● Data Source: BioConductor
● Keywords: datasets
● Alias: data:davidTiling, davidTiling
● 0 images

data:gff (Package: davidTiling) : Genomic features of Saccharomyces cerevisiae

A data frame with genomic features of Saccharomyces cerevisiae.
● Data Source: BioConductor
● Keywords: datasets
● Alias: data:gff, gff
● 0 images

data:probeAnno (Package: davidTiling) : An environment with probe mapping information for the Scerevisiae tiling array

The environment contains probe mapping information for the Affymetrix Scerevisiaetiling chip from 2004, which was custom-made for the Stanford Genome Center. The chips tile the complete genome of S. cerevisiae in steps of 8 bases, separately for each strand of each chromosome. The two tiles for one chromosome (Watson and Crick strands) are offset by 4 bases.
● Data Source: BioConductor
● Keywords: datasets
● Alias: data:probeAnno, probeAnno
● 0 images

yeastFeatures (Package: davidTiling) : A data.frame with metadata about the features in SGD GFF files

The rows of the data frame correspond to feature categories, such as "gene", "CDS", "telomere". The column isTranscribed is a logical vector that denotes whether this feature category is considered to be transcribable.
● Data Source: BioConductor
● Keywords: datasets
● Alias: yeastFeatures
● 0 images