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17 dengue virus serotype 4 sequences from Lanciotti et al. (1997)
● Data Source:
CranContrib
● Keywords: datasets
● Alias: DengueSeqs
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0 images
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woodmiceTrees
(Package: treescape) :
Bootstrap trees from woodmouse dataset
These trees were created using the neighbour-joining and bootstrapping example from the ape documentation.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: woodmiceTrees
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0 images
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fluTrees
(Package: treescape) :
BEAST analysis of seasonal influenza (A/H3N2)
These trees were created using BEAST on hemagglutinin (HA) segments of seasonal influenza A/H3N2 samples collected in New-York city (US) between 2000 and 2003. This data comes from the influenza BEAST tutorial distributed at: http://beast.bio.ed.ac.uk/tutorials
● Data Source:
CranContrib
● Keywords: datasets
● Alias: fluTrees
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0 images
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The maximum clade credibility (MCC) tree from DengueTrees
● Data Source:
CranContrib
● Keywords: datasets
● Alias: DengueBEASTMCC
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0 images
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DengueTrees
(Package: treescape) :
BEAST analysis of Dengue fever
These trees were created using one of the xml files provided with the original BEAST paper by Drummond and Rambaut (2007). They provide an example of 17 dengue virus serotype 4 sequences from Lanciotti et al. (1997) (available as DengueSeqs) and xml files with varying priors for model and clock rate. Here we include a random sample of 500 of the trees (from the second half of the posterior) produced using BEAST v1.8 with the standard GTR + Gamma + I substitution model with uncorrelated lognormal-distributed relaxed molecular clock (file 4).
● Data Source:
CranContrib
● Keywords: datasets
● Alias: DengueTrees
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0 images
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