treescape

Package: treescape
Title: Statistical Exploration of Landscapes of Phylogenetic Trees
Version: 1.9.17
Authors@R: c(TJ=person("Thibaut", "Jombart", email="thibaut.jombart@gmail.com", role = c("aut")),
MK=person("Michelle", "Kendall", email="m.kendall@imperial.ac.uk", role = c("aut", "cre")),
JAG=person("Jacob", "Almagro-Garcia", role = c("aut")),
CC=person("Caroline", "Colijn", role = c("aut")))
Maintainer: Michelle Kendall <m.kendall@imperial.ac.uk>
Description: Tools for the exploration of distributions of phylogenetic trees.
This package includes a shiny interface which can be started from R using
'treescapeServer()'.
Depends: R (>= 3.1.2), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory,
fields, htmlwidgets, MASS, phangorn, Rcpp, rgl, rglwidget,
RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: RColorBrewer, ggplot2, testthat, knitr, rmarkdown
License: GPL (>= 2)
LazyData: true
Collate: RcppExports.R metrics.R medTree.R treescape.R findGroves.R
plotGroves.R plotTreeDiff.R servers.R data.R
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-06-07 14:04:39 UTC; Michelle
Author: Thibaut Jombart [aut],
Michelle Kendall [aut, cre],
Jacob Almagro-Garcia [aut],
Caroline Colijn [aut]
Repository: CRAN
Date/Publication: 2016-06-07 16:36:17

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'treescape' ...
** package 'treescape' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c CPP_update_combinations.cpp -o CPP_update_combinations.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o treescape.so CPP_update_combinations.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/treescape/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'treescape'
    finding HTML links ... done
    DengueBEASTMCC                          html  
    DengueSeqs                              html  
    DengueTrees                             html  
    findGroves                              html  
    fluTrees                                html  
    linearMrca                              html  
    medTree                                 html  
    multiDist                               html  
    plotGroves                              html  
    finding level-2 HTML links ... done

    plotGrovesD3                            html  
    plotTreeDiff                            html  
    refTreeDist                             html  
    tipDiff                                 html  
    treeDist                                html  
    treeVec                                 html  
    treescape                               html  
    treescapeServer                         html  
    woodmiceTrees                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (treescape)
Making 'packages.html' ... done