plot_similarity_heatmap
(Package: AlignStat) :
A heatmap plot of the column identities between two multiple sequence alignments
A heatmap plot of the column identities between two multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: plot_similarity_heatmap
●
2 images
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plot_similarity_summary
(Package: AlignStat) :
A line plot summary of column similarity between two multiple sequence alignments
A line plot summary of column similarity between two multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: plot_similarity_summary
●
2 images
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plot_dissimilarity_matrix
(Package: AlignStat) :
A heatmap plot of the dissimilarity matrix of two multiple sequence alignments
A heatmap plot of the dissimilarity matrix of two multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: plot_dissimilarity_matrix
●
2 images
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plot_dissimilarity_summary
(Package: AlignStat) :
An area plot summary of the different causes of column dissimilarity between two multiple sequence alignments
An area plot summary of the different causes of column dissimilarity between two multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: plot_dissimilarity_summary
●
2 images
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plot_SP_summary
(Package: AlignStat) :
A line plot summary of sum of pairs score between two multiple sequence alignments
A line plot summary of sum of pairs score between two multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: plot_SP_summary
●
2 images
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compare_alignments
(Package: AlignStat) :
Compare alternative multiple sequence alignments
Compare alternative multiple sequence alignments
● Data Source:
CranContrib
● Keywords:
● Alias: compare_alignments
●
0 images
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AlignStat
(Package: AlignStat) :
AlignStat: A tool for the statistical comparison of alternative multiple sequence alignments
This package contains functions that compare two alternative multiple sequence alignments (MSAs) to determine whether they align homologous residues in the same columns as one another. It then classifies similarities and differences into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative to the other. Summarising these categories for each MSA column yields information on which sequence regions are agreed upon my both MSAs, and which differ. Several plotting functions enable easily visualisation of the comparison data for analysis.
● Data Source:
CranContrib
● Keywords:
● Alias: AlignStat, AlignStat-package
●
0 images
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