BiGGR-internal
(Package: BiGGR) :
Internal BiGGR functions and objects
Internal BiGGR functions and objects.
● Data Source:
BioConductor
● Keywords: internal
● Alias: .buildSubModel
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This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package aids in performing flux balance analysis (FBA). Metabolic networks and estimated fluxes can be visualized using hypergraphs.
● Data Source:
BioConductor
● Keywords: biggr
● Alias: BiGGR, BiGGR-package
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E.coli_iAF1260
(Package: BiGGR) :
Ecoli dataset with ORFs and thermodynamic information
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: ecoli
● Alias: E.coli_iAF1260
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E.coli_iJR904
(Package: BiGGR) :
Ecoli genome-scale model
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: ecoli
● Alias: E.coli_iJR904
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E.coli_textbook
(Package: BiGGR) :
Ecoli dataset from the BiGG database
A metabolic reconstruction for Escherichia from text books. The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: ecoli
● Alias: E.coli_textbook
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Glycolysis
(Package: BiGGR) :
Metabolic reconstruction of Glycolysis pathway
Model of Glycolysis pathway
● Data Source:
BioConductor
● Keywords: glycolysis
● Alias: Glycolysis
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H.pylori_ilT341
(Package: BiGGR) :
H.pylori in silico genome-scale characterization of single and double deletion mutants
An Expanded Metabolic Reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single and double deletion mutants. The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: hpylori
● Alias: H.pylori_ilT341
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H.sapiens_Recon_1
(Package: BiGGR) :
Reconstruction of human metabolism from the BiGG database
The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: hsapiens
● Alias: H.sapiens_Recon_1
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M.barkeri_iAF692
(Package: BiGGR) :
Metabolic reconstruction of M.barkeri from the BiGG database
The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: mbarkeri
● Alias: M.barkeri_iAF692
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M.tuberculosis_iNJ661
(Package: BiGGR) :
Metabolic reconstruction of M.tuberculosis from the BiGG database
A metabolic reconstruction for tuberculosis. The dataset was generated by downloading the SBML file of the reconstruction (http://bigg.ucsd.edu/bigg/exportSelect.pl) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.
● Data Source:
BioConductor
● Keywords: tuberculosis
● Alias: M.tuberculosis_iNJ661
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providing 
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