R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Classification

Results 1 - 10 of 53 found.
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KEGGEdge-class (Package: KEGGgraph) : Class 'KEGGEdge'

A class to represent 'relation' elements in KGML files and edge objects in a KEGG graph

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGEdge-class, entryID<-,KEGGEdge-method, getName,KEGGEdge-method, show,KEGGEdge-method
● 0 images

KEGGEdgeSubType-class (Package: KEGGgraph) : Class "KEGGEdgeSubType"

A class to represent subtype in KEGG

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGEdgeSubType-class, getName,KEGGEdgeSubType-method, getValue,KEGGEdgeSubType-method, show,KEGGEdgeSubType-method
● 0 images

KEGGGraphics-class (Package: KEGGgraph) : class 'KEGGGraphics'

A class to represent 'graphics' element in KGML files

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGGraphics-class
● 0 images

KEGGGroup-class (Package: KEGGgraph) : Class "KEGGGroup"

Class to represent 'group' nodes in KEGG pathways

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGGroup-class, getComponent, getComponent,KEGGGroup-method
● 0 images

KEGGNode-class (Package: KEGGgraph) : Class "KEGGNode"

The class to present 'entry' element in KGML files and nodes in KEGG graphs

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGNode-class, entryID<-, entryID<-,KEGGNode-method, getComponent,KEGGNode-method, name<-, name<-,KEGGNode-method, show,KEGGNode-method
● 0 images

KEGGPathway-class (Package: KEGGgraph) : Class "KEGGPathway"

A class to represent KEGG pathway

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGPathway-class, edges,KEGGPathway,ANY-method, edges,KEGGPathway-method, edges<-, edges<-,KEGGPathway-method, getName,KEGGPathway-method, getTitle,KEGGPathway-method, nodes,KEGGPathway-method, nodes<-,KEGGPathway,ANY-method, show,KEGGPathway-method
● 0 images

KEGGPathwayInfo-class (Package: KEGGgraph) : Class "KEGGPathwayInfo"

A class to represent information of a KEGG pathway

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGPathwayInfo-class, getTitle,KEGGPathwayInfo-method, show,KEGGPathwayInfo-method
● 0 images

KEGGReaction-class (Package: KEGGgraph) : Class "KEGGReaction"

A class to present 'reaction' elements in KGML files

● Data Source: BioConductor
● Keywords: classes
● Alias: KEGGReaction-class, getName,KEGGReaction-method, getProduct, getProduct,KEGGReaction-method, getSubstrate, getSubstrate,KEGGReaction-method, show,KEGGReaction-method
● 0 images

KEGGpathway2Graph (Package: KEGGgraph) : Parses KEGGpathway to graph

The function parses an object of KEGGPathway-class into graph.

● Data Source: BioConductor
● Keywords:
● Alias: KEGGpathway2Graph
● 0 images

KEGGpathway2reactionGraph (Package: KEGGgraph) : Convert chemical reaction network of KEGG pathway into graph

Regulatory pathways are always viewed as protein networks, so there is no 'reaction' information saved in their KGML files. Metabolic pathways are viewed both as both protein networks and chemical networks, hence the KEGGPathway-class object may have reactions information among chemical compounds.

● Data Source: BioConductor
● Keywords:
● Alias: KEGGpathway2reactionGraph
● 0 images