R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Data set

Classification

Results 1 - 10 of 37 found.
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MassArrayData-class (Package: MassArray) : Class "MassArrayData"

A data structure containing MassArray data and associated information for a single amplicon

● Data Source: BioConductor
● Keywords: classes
● Alias: $,MassArrayData-method, $<-,MassArrayData-method, MassArrayData-class, [,MassArrayData-method, initialize,MassArrayData-method
● 0 images

MassArrayFragment-class (Package: MassArray) : Class "MassArrayFragment"

A data structure containing information for a single fragment of an amplicon

● Data Source: BioConductor
● Keywords: classes
● Alias: $,MassArrayFragment-method, $<-,MassArrayFragment-method, MassArrayFragment-class, initialize,MassArrayFragment-method
● 0 images

MassArrayPeak-class (Package: MassArray) : Class "MassArrayPeak"

A data structure containing information and data for a single peak from a single spectrum

● Data Source: BioConductor
● Keywords: classes
● Alias: $,MassArrayPeak-method, $<-,MassArrayPeak-method, MassArrayPeak-class, initialize,MassArrayPeak-method
● 0 images

MassArraySpectrum-class (Package: MassArray) : Class "MassArraySpectrum"

A data structure containing MassArray spectral data for a single sample

● Data Source: BioConductor
● Keywords: classes
● Alias: $,MassArraySpectrum-method, $<-,MassArraySpectrum-method, MassArraySpectrum-class, initialize,MassArraySpectrum-method
● 0 images

ampliconPrediction (Package: MassArray) : Amplicon prediction

Function to predict amplicon fragmentation pattern and details for T&C reactions on the plus and minus strands

● Data Source: BioConductor
● Keywords: aplot, attribute, character, graphs
● Alias: ampliconPrediction
● 1 images

analyzeCpGs (Package: MassArray) : Analyze CG methylation

Function to determine percent methylation for all CGs from input fragmentation

● Data Source: BioConductor
● Keywords: arith, attribute
● Alias: analyzeCpGs
● 1 images

bisConvert (Package: MassArray) : Bisulphite conversion

Bisulphite convert nucleotide sequence input

● Data Source: BioConductor
● Keywords: character
● Alias: bisConvert
● 0 images

calcMW (Package: MassArray) : Calculate molecular weight

Function to calculate molecular weight of a fragment generated by the MassCLEAVE assay for either the T or C cleavage reactions

● Data Source: BioConductor
● Keywords: arith, character
● Alias: calcMW
● 0 images

calcMeth (Package: MassArray) : Calculate percent methylation

Function to calculate percent methylation from a collection of peaks corresponding to a single fragment.

● Data Source: BioConductor
● Keywords: arith, manip
● Alias: calcMeth
● 0 images

calcPercentAdduct (Package: MassArray) : Calculate percent salt adducts

Function to calculate ratio of salt adduct peak heights to reference/unmodified peaks

● Data Source: BioConductor
● Keywords: arith, attribute
● Alias: calcPercentAdduct
● 0 images