MAcancer
(Package: MethylMix) :
Cancer Gene expression data of glioblastoma patients from the TCGA
Cancer Gene expression data of glioblastoma patients from the TCGA project. A set of 14 genes that have been shown in the literature to be involved in differential methylation in glioblastoma were selected as an example to try out MethylMix.
● Data Source:
BioConductor
● Keywords:
● Alias: MAcancer
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0 images
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MAcancer_CDH1
(Package: MethylMix) :
Cancer Gene expression data of CDH1 for breast cancer patients from the
Cancer Gene expression data for the gene CDH1 of breast cancer patients from the TCGA project.
● Data Source:
BioConductor
● Keywords:
● Alias: MAcancer_CDH1
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0 images
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METcancer
(Package: MethylMix) :
DNA methylation data from cancer tissue from glioblastoma patients from
Cancer Gene expression data of glioblastoma patients from the TCGA project. A set of 14 genes that have been shown in the literature to be involved in differential methylation in glioblastoma were selected as an example to try out MethylMix.
● Data Source:
BioConductor
● Keywords:
● Alias: METcancer
●
0 images
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METcancer_CDH1
(Package: MethylMix) :
DNA methylation data for CDH1 from the breast cancer TCGA project.
Raw DNA methylation data for CDH1 from the 450k Infinium platform from breast cancer patients from the TCGA project.
● Data Source:
BioConductor
● Keywords:
● Alias: METcancer_CDH1
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0 images
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METnormal
(Package: MethylMix) :
DNA methylation data from normal tissue from glioblastoma patients.
Normal tissue DNA methylation data of glioblastoma patients. These normal tissue samples were run on the same platform and are described in the publication referenced below.
● Data Source:
BioConductor
● Keywords:
● Alias: METnormal
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0 images
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METnormal_CDH1
(Package: MethylMix) :
DNA methylation data for CDH1 from the breast cancer TCGA project.
Raw DNA methylation data for CDH1 from the 450k Infinium platform from breast cancer patients from the TCGA project.
● Data Source:
BioConductor
● Keywords:
● Alias: METnormal_CDH1
●
0 images
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MethylMix
(Package: MethylMix) :
Mixture model for DNA methylation data in cancer.
MethylMix identifies DNA methylation driven genes by modeling DNA methylation data in cancer vs. normal and looking for homogeneous subpopulations. In addition matched gene expression data (e.g. from microarray technology or RNA sequencing) is used to identify functional DNA methylation events by requiring a negative correlation between methylation and gene expression of a particular gene.
● Data Source:
BioConductor
● Keywords:
● Alias: MethylMix
●
0 images
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MethylMix identifies DNA methylation driven genes by modeling DNA methylation data in cancer vs. normal and looking for homogeneous subpopulations. In addition matched gene expression data (e.g. from microarray technology or RNA sequencing) is used to identify functional DNA methylation events by requiring a negative correlation between methylation and gene expression of a particular gene.
● Data Source:
BioConductor
● Keywords:
● Alias: MethylMix_PlotModel
●
14 images
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