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Mirsynergy is a deterministic overlapping clustering algorithm adapted from a recently developed framework. Mirsynergy operates in two stages that first forms MRM based on co-occurring miRNAs and then expand the MRM by greedily including (excluding) mRNA into (from) the MRM to maximize the synergy score, which is a function of miRNA-mRNA and gene-gene interactions.
● Data Source:
BioConductor
● Keywords: Mirsynergy
● Alias: Mirsynergy, Mirsynergy-package
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Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion using a deterministic overlapping clustering algorithm adapted from a recently developed framework. Mirsynergy operates in two stages that first forms MRM based on co-occurring miRNAs and then expand the MRM by greedily including (excluding) mRNA into (from) the MRM to maximize the synergy score, which is a function of miRNA-mRNA and gene-gene interactions.
● Data Source:
BioConductor
● Keywords: clustering, microRNA
● Alias: mirsynergy
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Plot module statistics using output from mirsynergy.
● Data Source:
BioConductor
● Keywords:
● Alias: plot_module_summary
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Plot as network graphical view of the output from mirsynergy V. NB: small network only.
● Data Source:
BioConductor
● Keywords:
● Alias: plot_modules
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Print basic information of the formed modules.
● Data Source:
BioConductor
● Keywords:
● Alias: print_modules2
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Return summary information of the formed modules, which are the outputs from mirsynergy
● Data Source:
BioConductor
● Keywords:
● Alias: summary_modules
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Generate tabulated module assignments and nodes for input to Cystoscape.
● Data Source:
BioConductor
● Keywords:
● Alias: tabular_module
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providing 
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