R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 25 found.
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categories (Package: RDAVIDWebService) : code{categories

Obtain ids related information, according to the given function call (see Values).

● Data Source: BioConductor
● Keywords:
● Alias: categories, categories,DAVIDFunctionalAnnotationChart-method, categories,DAVIDFunctionalAnnotationTable-method
● 0 images

DAVIDGenes (Package: RDAVIDWebService) : High level constructors for DAVIDWebService package's classes.

Different ways to build the different DAVIDWebService's object according to the signature in use.

● Data Source: BioConductor
● Keywords:
● Alias: DAVIDFunctionalAnnotationChart, DAVIDFunctionalAnnotationChart,character-method, DAVIDFunctionalAnnotationChart,data.frame-method, DAVIDFunctionalAnnotationChart-methods, DAVIDFunctionalAnnotationTable, DAVIDFunctionalAnnotationTable,character-method, DAVIDFunctionalAnnotationTable,data.frame-method, DAVIDFunctionalAnnotationTable-methods, DAVIDGODag, DAVIDGODag,DAVIDFunctionalAnnotationChart-method, DAVIDGODag-methods, DAVIDGeneCluster, DAVIDGeneCluster,character-method, DAVIDGeneCluster-methods, DAVIDGenes, DAVIDGenes,character-method, DAVIDGenes,data.frame-method, DAVIDGenes-methods, DAVIDTermCluster, DAVIDTermCluster,character-method, DAVIDTermCluster-methods, as, initialize, initialize,DAVIDCluster-method, initialize,DAVIDFunctionalAnnotationChart-method, initialize,DAVIDFunctionalAnnotationTable-method, initialize,DAVIDGODag-method, initialize,DAVIDGeneCluster-method, initialize,DAVIDGenes-method, initialize,DAVIDTermCluster-method
● 0 images

genes (Package: RDAVIDWebService) : code{genes

Obtain genes related information, according to the given function call (see Values).

● Data Source: BioConductor
● Keywords:
● Alias: genes, genes,DAVIDFunctionalAnnotationTable-method, genes,DAVIDGeneCluster-method, genes,DAVIDGenes-method, genes-methods
● 0 images

ids (Package: RDAVIDWebService) : code{ids

Obtain ids related information, according to the given function call (see Values).

● Data Source: BioConductor
● Keywords:
● Alias: ids, ids,DAVIDFunctionalAnnotationChart-method, ids,DAVIDGeneCluster-method, ids,DAVIDGenes-method, ids,DAVIDTermCluster-method
● 0 images

plot2D (Package: RDAVIDWebService) : Visualization of biological relationships

plot2D uses a 2D tile ggplot to explore biological relationships between two variables such as annotation category and genes, for Functional Annotation Chart/Table or Term cluster results. For Gene cluster, the cluster number vs genes membership is plotted.

● Data Source: BioConductor
● Keywords:
● Alias: plot2D, plot2D,DAVIDFunctionalAnnotationChart-method, plot2D,DAVIDFunctionalAnnotationTable-method, plot2D,DAVIDGeneCluster-method, plot2D,DAVIDResult-method, plot2D,DAVIDTermCluster-method, plot2D-methods
● 1 images

show (Package: RDAVIDWebService) : Basic console output

The different implementations of show function for the DAVIDWebService package classes.

● Data Source: BioConductor
● Keywords:
● Alias: show, show,DAVIDCluster-method, show,DAVIDFunctionalAnnotationChart-method, show,DAVIDFunctionalAnnotationTable-method, show,DAVIDGenes-method, show,DAVIDResult-method, show,DAVIDWebService-method
● 0 images

summary (Package: RDAVIDWebService) : Basic summary for DAVIDWebService package classes.

The different implementations of summary function for the DAVIDWebService package classes.

● Data Source: BioConductor
● Keywords:
● Alias: summary, summary,DAVIDCluster-method, summary,DAVIDGODag-method, summary,DAVIDWebService-method
● 0 images

DAVIDCluster-class (Package: RDAVIDWebService) : class "DAVIDCluster

This virtual class represents the output of a DAVID "Cluster" report, with "DAVIDTermCluster" and "DAVIDGeneCluster" as possible heirs, according to the report used.

● Data Source: BioConductor
● Keywords: classes
● Alias: DAVIDCluster-class
● 0 images

cluster (Package: RDAVIDWebService) : Methods for code{DAVIDCluster

Obtain DAVIDCluster related information, according to the given function call (see Values).

● Data Source: BioConductor
● Keywords:
● Alias: cluster, cluster,DAVIDCluster-method, cluster-methods, enrichment, enrichment,DAVIDCluster-method, members, members,DAVIDCluster-method
● 0 images

DAVIDFunctionalAnnotationChart-class (Package: RDAVIDWebService) : class "DAVIDFunctionalAnnotationChart

This class represents the output of "Functional Annotation Chart" of DAVID. It is an heir of DAVIDResult in the conceptual way, and also a data.frame with additional features, such as identifying the unique and duplicate ids, searching for genes with a given id, etc.

● Data Source: BioConductor
● Keywords: classes
● Alias: DAVIDFunctionalAnnotationChart-class
● 1 images