MergeRDMLs
(Package: RDML) :
Merges code{RDML
Merges list of RDML objects. First object in list becomes base object.
● Data Source:
CranContrib
● Keywords:
● Alias: MergeRDMLs
●
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SetFData
(Package: RDML) :
code{RDML$SetFData()
Read more at RDML.SetFData
● Data Source:
CranContrib
● Keywords:
● Alias: SetFData
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0 images
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AsTable
(Package: RDML) :
code{RDML$AsTable()
Read more at RDML.AsTable
● Data Source:
CranContrib
● Keywords:
● Alias: AsTable
●
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RDML.GetFData
(Package: RDML) :
Gets fluorescence data vectors from code{RDML
Gets fluorescence data vectors from RDML object for specified method of experiment.
● Data Source:
CranContrib
● Keywords: manip
● Alias: RDML.GetFData
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AsDendrogram
(Package: RDML) :
code{RDML$AsDendrogram()
Read more at RDML.AsDendrogram
● Data Source:
CranContrib
● Keywords:
● Alias: AsDendrogram
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0 images
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new
(Package: RDML) :
Creates new instance of code{RDML
This function has been designed to import data from RDML v1.1 and v1.2 format files
● Data Source:
CranContrib
● Keywords:
● Alias: RDML.new, new
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RDML.SetFData
(Package: RDML) :
Sets fluorescence data vectors to code{RDML
Sets fluorescence data vectors to RDML object for specified method of experiment.
● Data Source:
CranContrib
● Keywords:
● Alias: RDML.SetFData
●
0 images
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RDML
(Package: RDML) :
R6 class code{RDML
Main purpose of this class is to work with RDML format data (Lefever et al. 2009) and transform it to the appropriate format of the qpcR (Ritz et al. 2008, Spiess et al. 2008) and chipPCR packages (see RDML.new for import details). Real-time PCR Data Markup Language (RDML) is the recommended file format element in the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines (Bustin et al. 2009). Inner structure of imported data mimics structure of RDML file v1.2. All data except fluorescence values can be represented as data.frame by method AsTable. Such variant of data representation allows easy samples filtering (by targets, types, etc.) and serves as request for GetFData method – gets fluorescence data for specified samples.
● Data Source:
CranContrib
● Keywords: Bio--Rad, CFX96, IO, LightCycler, RDML, StepOne, file, qPCR
● Alias: RDML
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0 images
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GetFData
(Package: RDML) :
code{RDML$GetFData()
Read more at RDML.GetFData
● Data Source:
CranContrib
● Keywords:
● Alias: GetFData
●
0 images
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RDML.AsDendrogram
(Package: RDML) :
Represents structure of code{RDML
Plots and/or returns structure of RDML file as dendrogram (tree view)
● Data Source:
CranContrib
● Keywords: manip
● Alias: RDML.AsDendrogram
●
0 images
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