Last data update: 2014.03.03

RDML

Package: RDML
Type: Package
Title: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Version: 0.9-1
LazyData: true
Date: 2015-07-21
Description: Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) format files and transforms to the appropriate
formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram
visualization for the structure of RDML object.
Authors@R: c(
person("Konstantin A.", "Blagodatskikh",
email = "k.blag@yandex.ru", role = c("cre", "aut")),
person("Stefan", "Roediger",
email = "stefan.roediger@b-tu.de",
role = "aut"),
person("Michal", "Burdukiewicz",
email = "michalburdukiewicz@gmail.com", role = "aut"))
License: GPL (>= 2)
URL: https://github.com/kablag/RDML
Depends: R (> 3.0.3)
Imports: R6 (>= 2.0.1), assertthat (>= 0.1), XML (>= 3.98-1.1), plyr
(>= 1.8.1), dplyr (>= 0.4.1), tidyr (>= 0.2.0), rlist (>= 0.4)
Collate: 'RDML.types.R' 'RDML.asserts.R' 'RDML.R' 'RDML.AsDendrogram.R'
'RDML.AsTable.R' 'RDML.GetFData.R' 'RDML.Merge.R'
'RDML.SetFData.R' 'RDML.init.R' 'functional_wrappers.R'
Suggests: knitr, chipPCR, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-21 12:49:38 UTC; kablag
Author: Konstantin A. Blagodatskikh [cre, aut],
Stefan Roediger [aut],
Michal Burdukiewicz [aut]
Maintainer: Konstantin A. Blagodatskikh <k.blag@yandex.ru>
Repository: CRAN
Date/Publication: 2015-07-22 06:08:46

● 0 images, 11 functions, 43 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RDML' ...
** package 'RDML' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RDML'
    finding HTML links ... done
    AsDendrogram-function                   html  
    GetFData-function                       html  
    MergeRDMLs                              html  
    RDML                                    html  
    finding level-2 HTML links ... done

    adpsType                                html  
    annotationType                          html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/annotationType.Rd:17: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/annotationType.Rd:18: missing file link 'is.string'
    asdendrogram-method                     html  
    astable-function                        html  
    astable-method                          html  
    baseTemperatureType                     html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/baseTemperatureType.Rd:22: missing file link 'is.count'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/baseTemperatureType.Rd:26: missing file link 'is.count'
    cdnaSynthesisMethodType                 html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/cdnaSynthesisMethodType.Rd:22: missing file link 'is.double'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/cdnaSynthesisMethodType.Rd:24: missing file link 'is.flag'
    commercialAssayType                     html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/commercialAssayType.Rd:21: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/commercialAssayType.Rd:22: missing file link 'is.string'
    cqDetectionMethodType                   html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/cqDetectionMethodType.Rd:28: missing file link 'is.string'
    dataCollectionSoftwareType              html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/dataCollectionSoftwareType.Rd:21: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/dataCollectionSoftwareType.Rd:22: missing file link 'is.string'
    dataType                                html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/dataType.Rd:26: missing file link 'is.string'
    documentationType                       html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/documentationType.Rd:22: missing file link 'is.string'
    dyeType                                 html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/dyeType.Rd:21: missing file link 'is.string'
    enumType                                html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/enumType.Rd:21: missing file link 'is.string'
    experimentType                          html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimentType.Rd:23: missing file link 'is.string'
    experimenterType                        html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimenterType.Rd:22: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimenterType.Rd:23: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimenterType.Rd:24: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimenterType.Rd:25: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/experimenterType.Rd:26: missing file link 'is.string'
    getfdata-method                         html  
    gradientType                            html  
    idReferencesType                        html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/idReferencesType.Rd:20: missing file link 'is.string'
    idType                                  html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/idType.Rd:20: missing file link 'is.string'
    labelFormatType                         html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/labelFormatType.Rd:27: missing file link 'is.string'
    lidOpenType                             html  
    loopType                                html  
    mdpsType                                html  
    measureType                             html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/measureType.Rd:25: missing file link 'is.string'
    new-method                              html  
    nucleotideType                          html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/nucleotideType.Rd:29: missing file link 'is.string'
    oligoType                               html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/oligoType.Rd:21: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/oligoType.Rd:23: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/oligoType.Rd:25: missing file link 'is.string'
    pauseType                               html  
    pcrFormatType                           html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/pcrFormatType.Rd:40: missing file link 'is.count'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/pcrFormatType.Rd:41: missing file link 'is.count'
    primingMethodType                       html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/primingMethodType.Rd:30: missing file link 'is.string'
    quantityType                            html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/quantityType.Rd:21: missing file link 'is.double'
    quantityUnitType                        html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/quantityUnitType.Rd:31: missing file link 'is.string'
    rdmlBaseType                            html  
    rdmlIdType                              html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/rdmlIdType.Rd:22: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/rdmlIdType.Rd:23: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/rdmlIdType.Rd:24: missing file link 'is.string'
    reactIdType                             html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/reactIdType.Rd:20: missing file link 'is.count'
    reactType                               html  
    runType                                 html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/runType.Rd:25: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/runType.Rd:28: missing file link 'is.string'
    sampleType                              html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/sampleType.Rd:32: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/sampleType.Rd:37: missing file link 'is.flag'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/sampleType.Rd:46: missing file link 'is.flag'
    sampleTypeType                          html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/sampleTypeType.Rd:32: missing file link 'is.string'
    sequencesType                           html  
    setfdata-function                       html  
    setfdata-method                         html  
    stepType                                html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/stepType.Rd:21: missing file link 'is.count'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/stepType.Rd:24: missing file link 'is.string'
    targetType                              html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/targetType.Rd:25: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/targetType.Rd:29: missing file link 'is.string'
    targetTypeType                          html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/targetTypeType.Rd:25: missing file link 'is.string'
    temperatureType                         html  
    templateQuantityType                    html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/templateQuantityType.Rd:20: missing file link 'is.double'
    thermalCyclingConditionsType            html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/thermalCyclingConditionsType.Rd:22: missing file link 'is.string'
    xRefType                                html  
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/xRefType.Rd:20: missing file link 'is.string'
Rd warning: /tmp/RtmpINDmHI/R.INSTALL6fa81e57b95e/RDML/man/xRefType.Rd:22: missing file link 'is.string'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RDML)
Making 'packages.html' ... done

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO