R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
Images
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Classification

Results 1 - 10 of 12 found.
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GetExampleData (Package: SubpathwayLNCE) :

Get variables in current environment.

● Data Source: CranContrib
● Keywords: file
● Alias: GetExampleData
● 0 images

getBackgroundLnc (Package: SubpathwayLNCE) :

getBackgroundLnc attempts to get the background of user-specified molecules.

● Data Source: CranContrib
● Keywords: file
● Alias: getBackgroundLnc
● 0 images

identifyLncGraphW (Package: SubpathwayLNCE) : Annotate and identify subpathways

Annotate user-interested molecules to pathways and identify significantly enriched subpathways.

● Data Source: CranContrib
● Keywords: file
● Alias: identifyLncGraphW
● 0 images

plotGraphL (Package: SubpathwayLNCE) : Visualize a pathway graph

Visualize a pathway graph.

● Data Source: CranContrib
● Keywords: file
● Alias: plotGraphL
● 0 images

envData (Package: SubpathwayLNCE) : The variables in the environment variable code{envData

The variables in the environment variable envData of the system.

● Data Source: CranContrib
● Keywords: file
● Alias: envData
● 0 images

SubpathwayLNCE-internal (Package: SubpathwayLNCE) : SubpathwayLNCE internal functions

These functions internally called by other functions in the package SupathwayLNCE and not meant to be called by the user.

● Data Source: CranContrib
● Keywords: internal
● Alias: ExpProcess, Getenvir, getEdgeLabel, getEdgeLty, getKGeneFromGene, getLayout, getNodeLabel, getOneNodePath, getSymbolFromGene, initialize
● 0 images

getLncGenePairs (Package: SubpathwayLNCE) : Get the co-express lncRNA-mRNA interactions

Get the co-express lncRNA-mRNA interactions reached a significant positive threshold. These lncRNAs-mRNAs pairs are competitivly rugulated.

● Data Source: CranContrib
● Keywords: file
● Alias: getLncGenePairs
● 0 images

printGraphW (Package: SubpathwayLNCE) : Print the results of graph annotation and identification

Print the results of graph annotation and identification.

● Data Source: CranContrib
● Keywords: file
● Alias: printGraphW
● 0 images

getInteUMGraph (Package: SubpathwayLNCE) : Get the reconstructed condition-specific lncRNA-regulated signal pathways

Get the reconstructed condition-specific LncRNA-regulated signal pathways embedded by lncRNAs of competitive regulation through linking to their regulated-mRNAs.

● Data Source: CranContrib
● Keywords: file
● Alias: getInteUMGraph
● 0 images

getInteGraphList (Package: SubpathwayLNCE) : Get the reconstructed signal pathway graphs

Get the reconstructed KEGG signal pathway graphs embedded by lncRNAs of competitive regulation.

● Data Source: CranContrib
● Keywords: file
● Alias: getInteGraphList
● 0 images