SubpathwayLNCE

Package: SubpathwayLNCE
Type: Package
Title: Identify Signal Subpathways Competitively Regulated by LncRNAs
Based on ceRNA Theory
Version: 1.0
Date: 2016-1-15
Author: Xinrui Shi, Chunquan Li and Xia Li
Maintainer: Xinrui Shi <xinrui103@163.com>
Description: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies.
Depends: R (>= 2.10), igraph, RBGL, utils, BiasedUrn, graph, graphics,
stats
Suggests: XML
Collate: ExpProcess.r getBackgroundLnc.r getEdgeLabel.r getEdgeLty.r
getEnvironmentData.r getInteGraphList.r getInteUMGraph.r
getKGeneFromGene.r getLayout.r getLncGenePairs.r
getExampleData.r getLocSubGraphLnc.r getNodeLabel.r
getOneNodePath.r getSymbolFromGene.r identifyLncGraphW.r
plotAnnGraph.r plotGraphL.r printGraphW.r
LazyData: Yes
License: GPL (>= 2)
biocViews: Statistics, SuPathways, LncRNAs, enrichment analysis,ceRNA
Packaged: 2016-01-19 01:50:31 UTC; Administrator
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-19 08:17:59

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SubpathwayLNCE' ...
** package 'SubpathwayLNCE' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SubpathwayLNCE'
    finding HTML links ... done
    SubpathwayLNCE-internal                 html  
    envData                                 html  
    getBackgroundLnc                        html  
    getExampleData                          html  
    getInteGraphList                        html  
    getInteUMGraph                          html  
    getLncGenePairs                         html  
    getLocSubGraphLnc                       html  
    identifyLncGraphW                       html  
    plotAnnGraph                            html  
    finding level-2 HTML links ... done

    plotGraphL                              html  
    printGraphW                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SubpathwayLNCE)
Making 'packages.html' ... done